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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BLCA cis rs6759004 1 rs6759004 chr2:202004676 PPIL3 chr2:201735680-201753999:- -0.63 -8.91 2.06E-17 Triptolide cytotoxicity
BLCA cis rs10935120 1 rs6763088 chr3:134254989 ANAPC13 chr3:134196547-134204865:- -0.5 -7.97 1.89E-14 Height
BLCA cis rs10935120 1 rs6763088 chr3:134254989 CEP63 chr3:134204575-134293852:+ -0.24 -4.09 5.33E-5 Height
BLCA cis rs10935120 1 rs6763093 chr3:134254995 ANAPC13 chr3:134196547-134204865:- -0.5 -7.96 2.01E-14 Height
BLCA cis rs10935120 1 rs6763093 chr3:134254995 CEP63 chr3:134204575-134293852:+ -0.24 -4.2 3.39E-5 Height
BLCA cis rs9815354 1 rs6763829 chr3:41897046 ULK4 chr3:41288091-42003660:- 0.64 9.91 9.53E-21 Diastolic blood pressure
BLCA cis rs10935120 1 rs6765505 chr3:134208132 ANAPC13 chr3:134196547-134204865:- 0.48 7.71 1.1E-13 Height
BLCA cis rs10935120 1 rs6765505 chr3:134208132 CEP63 chr3:134204575-134293852:+ 0.24 4.11 4.93E-5 Height
BLCA cis rs10935120 1 rs6766818 chr3:134226159 ANAPC13 chr3:134196547-134204865:- 0.51 8.28 2.13E-15 Height
BLCA cis rs10935120 1 rs6766818 chr3:134226159 CEP63 chr3:134204575-134293852:+ 0.26 4.53 7.95E-6 Height
BLCA cis rs10935120 1 rs6766897 chr3:134191303 ANAPC13 chr3:134196547-134204865:- 0.47 7.23 2.7E-12 Height
BLCA cis rs1401999 1 rs6767013 chr3:183680102 ABCC5 chr3:183637726-183735727:- -0.2 -3.84 0.000142 Anterior chamber depth
BLCA cis rs1401999 1 rs6767013 chr3:183680102 VWA5B2 chr3:183948317-183960116:+ -0.24 -3.85 0.00014 Anterior chamber depth
BLCA cis rs9815354 1 rs6768128 chr3:41865080 ULK4 chr3:41288091-42003660:- 0.62 9.66 6.48E-20 Diastolic blood pressure
BLCA cis rs9815354 1 rs6768542 chr3:41865474 ULK4 chr3:41288091-42003660:- 0.62 9.66 6.48E-20 Diastolic blood pressure